【問題】HISAT a fast spliced aligner with low memory requirements ?推薦回答
關於「HISAT a fast spliced aligner with low memory requirements」標籤,搜尋引擎有相關的訊息討論:
(PDF) HISAT: A fast spliced aligner with low memory requirements。
2015年3月9日 · PDF | HISAT (hierarchical indexing for spliced alignment of transcripts) is a highly efficient system for aligning reads from RNA sequencing ...。
HISAT: a fast spliced aligner with low memory requirements - PubMed。
HISAT (hierarchical indexing for spliced alignment of transcripts) is a highly efficient system for aligning reads from RNA sequencing experiments.: 。
HISAT: a fast spliced aligner with low memory requirements - NCBI。
2015年3月9日 · HISAT (hierarchical indexing for spliced alignment of transcripts) is a highly efficient system for aligning reads from RNA sequencing ...: 。
HISAT: a fast spliced aligner with low memory requirements。
HISAT (hierarchical indexing for spliced alignment of transcripts) is a highly efficient system for aligning reads from RNA sequencing experiments.: 。
HSRA: Hadoop-based spliced read aligner for RNA sequencing data。
2018年7月31日 · In terms of memory consumption, HISAT2 has very low memory ... To do so, HSRA integrates the fast spliced aligner HISAT2 into Hadoop.。
IsoSplitter: identification and characterization of alternative splicing ...。
alternative splicing sites without a reference genome ... time and memory usage between IsoSplitter, AStrap and ... HISAT: a fast spliced aligner with low ...。
[PDF] Web-based bioinformatics workflows for end-to-end RNA-seq data ...。
2013;29(1):15–21. 18. Kim D, Langmead B, Salzberg SL. HISAT: a fast spliced aligner with low memory requirements. Nat Methods. 2015;12(4):357–60.。
RNA Transcriptome Mapping with GraphMap | bioRxiv。
2017年7月6日 · Some de novo splice aligners first perform initial read mapping trying to ... HISAT: a fast spliced aligner with low memory requirements.。
Cloud accelerated alignment and assembly of full-length single-cell ...。
2019年12月30日 · Read alignment and transcript assembly are the core of RNA-seq analysis for ... HISAT: a fast spliced aligner with low memory requirements,.。
Mapping and differential expression analysis from short-read RNA ...。
On the other hand, spliced aligners are capable of mapping RNA-Seq data to a ... S. L. (2015) HISAT: a fast spliced aligner with low memory requirements.
常見HISAT a fast spliced aligner with low memory requirements問答
延伸文章資訊The original sequence FASTA files are no longer used by HISAT2 once the index is built. Example f...
HISAT2 can incorporate exons and splice sites into the index file for alignment ... GRCh38.86.gtf...
With the human genome, for example, hisat2 builds one global index and 48000 local indexes (each ...
hisat2-build - Build an index of a genome for use by hisat2. Launching the program. command. hisa...
HISAT2建立索引时,就应该把转录组信息加进去。 HISAT2提供两个Python脚本将GTF文件转换成hisat2-build能使用的文件:. extract_exons.py Homo_s...
You should build the index with something like: hisat2-build genome.fa index_name. Where genome.f...
The original sequence FASTA files are no longer used by HISAT2 once the index is built. Example f...
HISAT2 can incorporate exons and splice sites into the index file for alignment ... GRCh38.86.gtf...
With the human genome, for example, hisat2 builds one global index and 48000 local indexes (each ...
hisat2-build - Build an index of a genome for use by hisat2. Launching the program. command. hisa...
HISAT2建立索引时,就应该把转录组信息加进去。 HISAT2提供两个Python脚本将GTF文件转换成hisat2-build能使用的文件:. extract_exons.py Homo_s...
You should build the index with something like: hisat2-build genome.fa index_name. Where genome.f...